Just place foil over the cupcake pan and poke small holes and place cones in so they don't move.

Just read on another site a way to bake these easier: line muffin tins with liners and put the cones UPSIDE DOWN in each to bake. Although the final frosted picture was a bit more "square" of a scoop than usual it certainly makes more sense and I doubt the kids care. As for transporting, I love the idea below of the Press and Seal wrap. No cutting holes in cardboard or aluminum pans. THANKS for all the great ideas!

The tip I read to keep the cone from being soggy is to prick the bottom of the cone with a fork, (just a couple hole will do) this will allow steam and heat to escape while the cupcakes cool.

I use waffle cups! Kids love them!